There are no known bugs in ASTRAL that have not been fixed. Please find some and report them. See the comments file for more information. The residue numbers in the ATOM records of 1gp8 and 2gp8 appear to be off by one column; although the syntax is legal, the last digit of each residue number is in the insertion code field. These PDB entries are classified in SCOP, but are not in the first 7 classes. The atom records for 1msh appear truncated at atom 65533, probably due to overflow. There are some bugs in the underlying PDB files which we do not attempt to fix; we have identified files with missing residues in the SEQRES records (which were present in the ATOM records), and cases where the residues in the SEQRES and ATOM fields do not match. These are lists of those PDB chains and domains which appear in our sequence sets. Domains with mismatches between SEQRES and ATOM records (cases where a coordinates for a residue are given in the ATOM records, but the SEQRES records indicate a different residue should appear at that position: d1a37a_ k 212 -> d d1a37b_ k 212 -> d d1a6ya_ h 116 -> l d1a6yb_ h 116 -> l d1al4a_ v 1A -> i d1al4a_ x 1 -> v d1al4b_ v 1A -> i d1al4b_ x 1 -> v d1alza_ v 1A -> i d1alza_ x 1 -> v d1b8mb_ e 68 -> a d1bccb1 q 305 -> n d1bccb2 q 305 -> n d1bg3a1 l 911 -> a d1bg3a2 l 911 -> a d1bg3a3 l 911 -> a d1bg3a4 l 911 -> a d1bsfa_ a 28 -> r d1bsfb_ a 28 -> r d1buab_ q 224 -> n d1bxka_ r 350 -> g d1d2qa_ e 263 -> a d1d2qa_ l 265 -> a d1d2qa_ n 140 -> a d1d2qa_ p 139 -> a d1dd7a_ y 445 -> a d1e5ra_ q 67 -> a d1e9yb1 l 324 -> k d1e9yb1 l 324 -> k d1e9yb2 l 324 -> k d1e9yb2 l 324 -> k d1fna__ d 7 -> s d1fna__ r 6 -> g d1gtl1_ a 357 -> p d1gtl1_ s 353 -> q d1gtl2_ a 357 -> p d1gtl2_ s 353 -> q d1gw8a_ f 1313 -> n d1gw8a_ n 1245 -> q d1gw8a_ q 1354 -> l d1gw8a_ v 1185 -> n d1gw8b_ f 2313 -> n d1gw8b_ n 2245 -> q d1gw8b_ q 2354 -> l d1gw8b_ r 2016 -> l d1gw8b_ s 2188 -> q d1gw8b_ y 2355 -> q d1gw8c_ f 3313 -> n d1gw8c_ n 3245 -> q d1gw8d_ f 1313 -> n d1gw8d_ n 1245 -> q d1gw8d_ q 1354 -> l d1gw8d_ v 1185 -> n d1gw8e_ f 2313 -> n d1gw8e_ n 2245 -> q d1gw8e_ q 2354 -> l d1gw8e_ r 2016 -> l d1gw8e_ s 2188 -> q d1gw8e_ y 2355 -> q d1gw8f_ f 3313 -> n d1gw8f_ n 3245 -> q d1gw8g_ f 1313 -> n d1gw8g_ n 1245 -> q d1gw8g_ q 1354 -> l d1gw8g_ v 1185 -> n d1gw8h_ f 2313 -> n d1gw8h_ n 2245 -> q d1gw8h_ q 2354 -> l d1gw8h_ r 2016 -> l d1gw8h_ s 2188 -> q d1gw8h_ y 2355 -> q d1gw8i_ f 3313 -> n d1gw8i_ n 3245 -> q d1gw8j_ f 1313 -> n d1gw8j_ n 1245 -> q d1gw8j_ q 1354 -> l d1gw8j_ v 1185 -> n d1gw8k_ f 2313 -> n d1gw8k_ n 2245 -> q d1gw8k_ q 2354 -> l d1gw8k_ r 2016 -> l d1gw8k_ s 2188 -> q d1gw8k_ y 2355 -> q d1gw8l_ f 3313 -> n d1gw8l_ n 3245 -> q d1h76a1 e 342 -> i d1h76a2 e 342 -> i d1h9lb_ a 131 -> r d1h9lb_ r 125 -> a d1h9lb_ r 61 -> a d1haxb_ r 131 -> a d1hayb_ r 131 -> a d1hb0b_ r 131 -> a d1hj9a_ a 221 -> q d1hj9a_ g 184 -> y d1hj9a_ g 188 -> k d1hj9a_ k 188A -> g d1hj9a_ q 221A -> a d1hj9a_ y 184A -> g d1hra__ p 1 -> m d1i3sa_ m 86 -> h d1jdfa1 q 229 -> a d1jdfa2 q 229 -> a d1jdfb1 d 169 -> a d1jdfb1 e 214 -> a d1jdfb1 e 412 -> a d1jdfb1 k 158 -> a d1jdfb1 k 386 -> a d1jdfb1 k 60 -> a d1jdfb1 r 190 -> a d1jdfb2 d 169 -> a d1jdfb2 e 214 -> a d1jdfb2 e 412 -> a d1jdfb2 k 158 -> a d1jdfb2 k 386 -> a d1jdfb2 k 60 -> a d1jdfb2 r 190 -> a d1jdfc1 e 214 -> a d1jdfc1 k 361 -> a d1jdfc2 e 214 -> a d1jdfc2 k 361 -> a d1jdfd1 e 214 -> a d1jdfd1 e 412 -> a d1jdfd1 k 361 -> a d1jdfd1 s 47 -> a d1jdfd1 t 6 -> a d1jdfd2 e 214 -> a d1jdfd2 e 412 -> a d1jdfd2 k 361 -> a d1jdfd2 s 47 -> a d1jdfd2 t 6 -> a d1l3aa_ a 166 -> t d1l3ab_ a 166 -> t d1l3ac_ a 166 -> t d1l3ad_ a 166 -> t d1mcba2 e 1 -> p d1mcbb2 e 1 -> p d1mcca2 e 1 -> p d1mccb2 e 1 -> p d1mcda2 e 1 -> p d1mcdb2 e 1 -> p d1mcea2 e 1 -> p d1mceb2 e 1 -> p d1mcfa2 e 1 -> p d1mcfb2 e 1 -> p d1mcha2 e 1 -> p d1mchb2 e 1 -> p d1mcia2 e 1 -> p d1mcib2 e 1 -> p d1mcja2 e 1 -> p d1mcjb2 e 1 -> p d1mcka2 e 1 -> p d1mckb2 e 1 -> p d1mcla2 e 1 -> p d1mclb2 e 1 -> p d1mcna2 e 1 -> p d1mcnb2 e 1 -> p d1mcqa2 e 1 -> p d1mcqb2 e 1 -> p d1mcra2 e 1 -> p d1mcrb2 e 1 -> p d1mcsa2 e 1 -> p d1mcsb2 e 1 -> p d1mioa_ s 426 -> a d1nfie_ c 206 -> g d1nfie_ n 249 -> q d1nfif_ c 206 -> g d1nfif_ n 249 -> q d1pda_1 a 241 -> g d1pda_1 g 261 -> a d1pda_2 a 241 -> g d1pda_2 g 261 -> a d1s01__ a 182 -> s d1s01__ a 89 -> s d1s01__ a 99 -> d d1s01__ d 61 -> n d1s01__ d 98 -> a d1s01__ g 169 -> a d1s01__ n 57 -> p d1s01__ p 56 -> n d1s01__ q 251 -> e d1s01__ s 158 -> t d1s01__ s 88 -> a d1s01__ t 159 -> s d1shkb_ a 112 -> q d1shkb_ a 126 -> r d1tbpa2 s 61 -> m d1tbpb2 s 61 -> m d1tnfa_ d 143 -> l d1tnfb_ d 143 -> l d1tnfc_ d 143 -> l d1tx4b_ a 51 -> k d1x11a_ d 451 -> r d1ysac_ s 225 -> k d1ysad_ s 224 -> m d1ysad_ s 225 -> k d2at1b1 n 104 -> d d2at1b2 n 104 -> d d2at1d1 n 104 -> d d2at1d2 n 104 -> d d2bce__ n 187 -> q d2bce__ n 361 -> q d2fam__ k 146 -> a d2glsa1 p 447 -> r d2glsa2 p 447 -> r d2glsb1 p 447 -> r d2glsb2 p 447 -> r d2glsc1 p 447 -> r d2glsc2 p 447 -> r d2glsd1 p 447 -> r d2glsd2 p 447 -> r d2glse1 p 447 -> r d2glse2 p 447 -> r d2glsf1 p 447 -> r d2glsf2 p 447 -> r d2glsg1 p 447 -> r d2glsg2 p 447 -> r d2glsh1 p 447 -> r d2glsh2 p 447 -> r d2glsi1 p 447 -> r d2glsi2 p 447 -> r d2glsj1 p 447 -> r d2glsj2 p 447 -> r d2glsk1 p 447 -> r d2glsk2 p 447 -> r d2glsl1 p 447 -> r d2glsl2 p 447 -> r d2pf2_1 e 16 -> r d2pf2_1 r 15 -> e d2pf2_2 e 16 -> r d2pf2_2 r 15 -> e d2pfkc_ s 145 -> t d2pfkc_ t 144 -> s d2pfkd_ s 145 -> t d2pfkd_ t 144 -> s d2plv1_ i 10 -> t d2plv1_ l 7 -> s d2plv1_ m 9 -> s d2shkb_ a 112 -> q d3at1b1 n 104 -> d d3at1b2 n 104 -> d d3at1d1 n 104 -> d d3at1d2 n 104 -> d d3bccb1 q 305 -> n d3bccb2 q 305 -> n d3gbp__ q 25 -> e d3hvtb_ k 277 -> r d4at1b1 n 104 -> d d4at1b2 n 104 -> d d4at1d1 n 104 -> d d4at1d2 n 104 -> d d4ccp__ d 272 -> n d4icd__ e 331 -> q d5csca_ l 77 -> a d5cscb_ l 77 -> a d6at1b1 n 104 -> d d6at1b2 n 104 -> d d6at1d1 n 104 -> d d6at1d2 n 104 -> d d7at1b1 n 104 -> d d7at1b2 n 104 -> d d7at1d1 n 104 -> d d7at1d2 n 104 -> d d8atcb1 n 104 -> d d8atcb2 n 104 -> d d8atcd1 n 104 -> d d8atcd2 n 104 -> d d8gpb__ i 841 -> a d8gpb__ k 840 -> a Domains with missing SEQRES records (cases where coordinates for a residue are given in the ATOM records, but the residue is not included in the SEQRES records): d1alxa_ d1alza_ d1fcs__ d1gpja1 d1gpja2 d1gpja3 d1h74b1 d1h74b2 d1h74c1 d1h74c2 d1h74d1 d1h74d2 d1hhka1 d1hhka2 d1ifa__ d1ls3a_ d1ls3c_ d1lta.1 d1ltb.1 d1mdc__ d1sosa_ d1sosb_ d1sosc_ d1sosd_ d1sose_ d1sosf_ d1sosg_ d1sosh_ d1sosi_ d1sosj_ d3hhrc1 d3hhrc2 d9pti__ PDB chains with mismatches between SEQRES and ATOM records: 1a37A k 212 -> d 1a37B k 212 -> d 1a6yA h 116 -> l 1a6yB h 116 -> l 1al4A v 1A -> i 1al4A x 1 -> v 1al4B v 1A -> i 1al4B x 1 -> v 1alzA v 1A -> i 1alzA x 1 -> v 1b8mB e 68 -> a 1bccB q 305 -> n 1bg3A l 911 -> a 1bsfA a 28 -> r 1bsfB a 28 -> r 1buaB q 224 -> n 1bxkA r 350 -> g 1d2qA e 263 -> a 1d2qA l 265 -> a 1d2qA n 140 -> a 1d2qA p 139 -> a 1dd7A y 445 -> a 1e5rA q 67 -> a 1e9yB l 324 -> k 1fna_ d 7 -> s 1fna_ r 6 -> g 1gtl1 a 357 -> p 1gtl1 s 353 -> q 1gtl2 a 357 -> p 1gtl2 s 353 -> q 1gw8A f 1313 -> n 1gw8A n 1245 -> q 1gw8A q 1354 -> l 1gw8A v 1185 -> n 1gw8B f 2313 -> n 1gw8B n 2245 -> q 1gw8B q 2354 -> l 1gw8B r 2016 -> l 1gw8B s 2188 -> q 1gw8B y 2355 -> q 1gw8C f 3313 -> n 1gw8C n 3245 -> q 1gw8D f 1313 -> n 1gw8D n 1245 -> q 1gw8D q 1354 -> l 1gw8D v 1185 -> n 1gw8E f 2313 -> n 1gw8E n 2245 -> q 1gw8E q 2354 -> l 1gw8E r 2016 -> l 1gw8E s 2188 -> q 1gw8E y 2355 -> q 1gw8F f 3313 -> n 1gw8F n 3245 -> q 1gw8G f 1313 -> n 1gw8G n 1245 -> q 1gw8G q 1354 -> l 1gw8G v 1185 -> n 1gw8H f 2313 -> n 1gw8H n 2245 -> q 1gw8H q 2354 -> l 1gw8H r 2016 -> l 1gw8H s 2188 -> q 1gw8H y 2355 -> q 1gw8I f 3313 -> n 1gw8I n 3245 -> q 1gw8J f 1313 -> n 1gw8J n 1245 -> q 1gw8J q 1354 -> l 1gw8J v 1185 -> n 1gw8K f 2313 -> n 1gw8K n 2245 -> q 1gw8K q 2354 -> l 1gw8K r 2016 -> l 1gw8K s 2188 -> q 1gw8K y 2355 -> q 1gw8L f 3313 -> n 1gw8L n 3245 -> q 1h76A e 342 -> i 1h9lB a 131 -> r 1h9lB r 125 -> a 1h9lB r 61 -> a 1haxB r 131 -> a 1hayB r 131 -> a 1hb0B r 131 -> a 1hj9A a 221 -> q 1hj9A g 184 -> y 1hj9A g 188 -> k 1hj9A k 188A -> g 1hj9A q 221A -> a 1hj9A y 184A -> g 1hra_ p 1 -> m 1i3sA m 86 -> h 1jdfA q 229 -> a 1jdfB d 169 -> a 1jdfB e 214 -> a 1jdfB e 412 -> a 1jdfB k 158 -> a 1jdfB k 386 -> a 1jdfB k 60 -> a 1jdfB r 190 -> a 1jdfC e 214 -> a 1jdfC k 361 -> a 1jdfD e 214 -> a 1jdfD e 412 -> a 1jdfD k 361 -> a 1jdfD s 47 -> a 1jdfD t 6 -> a 1l3aA a 166 -> t 1l3aB a 166 -> t 1l3aC a 166 -> t 1l3aD a 166 -> t 1mcbA e 1 -> p 1mcbB e 1 -> p 1mccA e 1 -> p 1mccB e 1 -> p 1mcdA e 1 -> p 1mcdB e 1 -> p 1mceA e 1 -> p 1mceB e 1 -> p 1mcfA e 1 -> p 1mcfB e 1 -> p 1mchA e 1 -> p 1mchB e 1 -> p 1mciA e 1 -> p 1mciB e 1 -> p 1mcjA e 1 -> p 1mcjB e 1 -> p 1mckA e 1 -> p 1mckB e 1 -> p 1mclA e 1 -> p 1mclB e 1 -> p 1mcnA e 1 -> p 1mcnB e 1 -> p 1mcqA e 1 -> p 1mcqB e 1 -> p 1mcrA e 1 -> p 1mcrB e 1 -> p 1mcsA e 1 -> p 1mcsB e 1 -> p 1mioA s 426 -> a 1nfiE c 206 -> g 1nfiE n 249 -> q 1nfiF c 206 -> g 1nfiF n 249 -> q 1pda_ a 241 -> g 1pda_ g 261 -> a 1s01_ a 182 -> s 1s01_ a 89 -> s 1s01_ a 99 -> d 1s01_ d 61 -> n 1s01_ d 98 -> a 1s01_ g 169 -> a 1s01_ n 57 -> p 1s01_ p 56 -> n 1s01_ q 251 -> e 1s01_ s 158 -> t 1s01_ s 88 -> a 1s01_ t 159 -> s 1shkB a 112 -> q 1shkB a 126 -> r 1tbpA s 61 -> m 1tbpB s 61 -> m 1tnfA d 143 -> l 1tnfB d 143 -> l 1tnfC d 143 -> l 1tx4B a 51 -> k 1x11A d 451 -> r 1ysaC s 225 -> k 1ysaD s 224 -> m 1ysaD s 225 -> k 2at1B n 104 -> d 2at1D n 104 -> d 2bce_ n 187 -> q 2bce_ n 361 -> q 2fam_ k 146 -> a 2glsA p 447 -> r 2glsB p 447 -> r 2glsC p 447 -> r 2glsD p 447 -> r 2glsE p 447 -> r 2glsF p 447 -> r 2glsG p 447 -> r 2glsH p 447 -> r 2glsI p 447 -> r 2glsJ p 447 -> r 2glsK p 447 -> r 2glsL p 447 -> r 2pf2_ e 16 -> r 2pf2_ r 15 -> e 2pfkC s 145 -> t 2pfkC t 144 -> s 2pfkD s 145 -> t 2pfkD t 144 -> s 2plv1 i 10 -> t 2plv1 l 7 -> s 2plv1 m 9 -> s 2shkB a 112 -> q 3at1B n 104 -> d 3at1D n 104 -> d 3bccB q 305 -> n 3gbp_ q 25 -> e 3hvtB k 277 -> r 4at1B n 104 -> d 4at1D n 104 -> d 4ccp_ d 272 -> n 4icd_ e 331 -> q 5cscA l 77 -> a 5cscB l 77 -> a 6at1B n 104 -> d 6at1D n 104 -> d 7at1B n 104 -> d 7at1D n 104 -> d 8atcB n 104 -> d 8atcD n 104 -> d 8gpb_ i 841 -> a 8gpb_ k 840 -> a PDB chains with missing SEQRES records: 1alxA 1alzA 1fcs_ 1gpjA 1h74B 1h74C 1h74D 1hhkA 1ifa_ 1ls3A 1ls3C 1ltaC 1ltbC 1mdc_ 1sosA 1sosB 1sosC 1sosD 1sosE 1sosF 1sosG 1sosH 1sosI 1sosJ 3hhrC 9pti_